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Academic research papers
Preprints
2024
2023
2022
2021
2020
2019
2018
2017 and earlier
Chapters in edited books (refereed)
Review articles / commentaries
Academic research papers
Preprints
- Munby, H., Linderoth, T., Fischer, B., Liu, M., Vernaz, G., Tyers, A.M., Shechonge, A.H., Ngatunga, B.P., Denise, H., McCarthy, S., Bista, I., Miska, E.A., Santos, M.E., Genner, M.J., Turner, G.F. and Durbin, R. Differential use of multiple genetic sex determination systems in diverging ecomorphs of an African crater lake cichlid. bioRxiv. https://doi.org/10.1101/2021.08.05.455235
- Ciezarek, A.G., Mehta, T.K., Man, A., Ford, A., Kavembe, G.C., Kasozi, N., Ngatunga, B.P., Shechonge A.H., Tamatamah, R., Cnaani, A., Di Palma, F., Turner, G.F., Genner, M.J. & Haerty, W. Ancient and ongoing hybridization in the Oreochromis cichlid fishes. bioRxiv. https://www.biorxiv.org/content/10.1101/2023.05.19.541459v1
- Bucklow, C.V., Genner, M.J., Turner, G.F., Maclaine, J., Benson, R. and Verd, B. A whole-body micro-CT scan library that captures the skeletal diversity of Lake Malawi cichlid fishes. bioRxiv, https://doi.org/10.1101/2023.11.01.565162
- Gibson, T.I, Baillie, C., Collins, R.A., Wangensteen, O.S., Ellison, A., Heddell-Cowie, M., Westoby, H., Byatt, B., Lawson-Handley, L., Soto, A., Creer, S., Genner, M.J. & Mariani, S. Environmental DNA reveals ecologically relevant spatial and temporal variation in fish assemblages between estuaries and seasons. SSRN, http://dx.doi.org/10.2139/ssrn.4743310
2024
- Liu, Z., Kishe, M.A., Gabagambi, N.P., Shechonge, A.H., Ngatunga, B.P., Smith, K., Saxon, A.D., Hudson A.G., Linderoth, T, Turner, G.F., Collins, R.A. & Genner, M.J. (2024) Nuclear environmental DNA resolves fine-scale population genetic structure in an aquatic habitat. iScience 27, 108669
- Wilkie, C.J., Tellez, M.M., Jones, G. & Genner, M.J. (2024) Population genetic structure of Morelet’s and American crocodiles in Belize: hybridization, connectivity and conservation. Conservation Genetics. 25, 585–590
- Edgley, D.E., Carruthers, M., Gabagambi, N.P., Saxon, A.D., Smith, A.M., Joyce, D.A., Vernaz, G., Santos, M.E., Turner, G.F. & Genner, M.J. (2024) Lateral line system diversification during the early stages of ecological speciation in cichlid fish. BMC Ecology and Evolution, 24, 24
- Gracida-Juarez, C.A., Schmitter-Soto, J.J. & Genner, M.J. Community structure of indigenous fishes relative to habitat variation and invasive tilapia in lakes of Quintana Roo, Mexico. Environmental Biology of Fishes, https://doi.org/10.1007/s10641-024-01537-y
2023
- Greenhalgh, J., Genner, M.J. & Jones, G. (2023) Diurnal variation in temperate pond soundscapes and guidelines for survey design. Freshwater Biology 68, 1148-1160.
- Day, J.J., Steell, E.M, Vigliotta T.R., Whithey L.W., Bills, R., Friel, J.P., Genner, M.J. & Stiassny M.L.J. (2023) Exceptional levels of cryptic species discovery ameliorate inferences of the biogeography and diversification of an Afrotropical catfish clade. Molecular Phylogenetics and Evolution 182, 107754.
- Rutterford, L.R., Genner, M.J., Engelhard, G., Simpson, S.D., Hunter, E. (2023) Fishing impacts on age-structure may conceal environmental drivers of body-size in exploited fish populations. ICES Journal of Marine Science 80, 848–860.
- Rutterford, L.A., Simpson, S.D., Bogstad, B., Devine, J.A., Genner, M.J. (2023) Sea temperature is the primary driver of recent and predicted fish community structure across the Northeast Atlantic. Global Change Biology 29, 2510-2521.
- Scott, E., Edgley, D.E., Smith, A., Joyce, D.A., Genner, M.J., Ioannou, C.C. and Hauert, S. (2023) Lateral line morphology, sensory perception and collective behaviour in African cichlid fish. Royal Society – Open Science 10, 221478.
- Turner, G.F., Crampton D.A. & Genner, M.J. (2023) A new species of Lethrinops (Cichliformes: Cichlidae) from a Lake Malawi satellite lake, believed to be extinct in the wild. Zootaxa 5318, 515-530.
2022
- Carruthers, M., Edgley, D.E., Saxon, A.D., Gabagambi, N.P., Shechonge, A., Miska, E.A., Durbin, R., Bridle, J.R., Turner, G.F. & Genner, M.J. (2022) Ecological speciation promoted by divergent regulation of functional genes within African cichlid fishes. Molecular Biology and Evolution 39, msac251.
- Wagner, H.-J., Genner, M.J., Partridge J.C., Chung, W.-S., Marshall, N.J., Robison, B.H. and Douglas, R.H. (2022) Diversity and evolution of optically complex eyes in a family of deep-sea fish: Ocular diverticula in barreleye spookfish (Opisthoproctidae) Frontiers in Ecology and Evolution 10, 1044565.
- Vernaz, G., Hudson, A.G., Santos, M.E., Fischer, B., Carruthers, M., Shechonge, A., Gabagambi, N.P., Tyers, A.M., Ngatunga, B.P., Durbin, R., Turner, G.F., Genner, M.J. & Miska, E.A. (2022) Epigenetic divergence during early stages of speciation in African cichlid fish. Nature Ecology and Evolution 6, 1940-1951.
- Freer, J.J, Tarling, G., Collins, R.A., Collins M., Partridge, J.C., Genner, M.J (2022) Global phylogeography of hyperdiverse lanternfishes indicates sympatric speciation in the deep sea. Global Ecology and Biogeography 31, 2353-2367.
- Collins, R.A., Baillie, C., Halliday, N., Rainbird, S., Sims, D.W., Mariani, S. & Genner, M.J. (2022) Reproduction explains seasonal eDNA variation in a temperate marine fish community. Limnology and Oceanography Letters 7, 443-449.
- Liu Z., Collins, R.A., Baillie, C., Rainbird, S., Brittain, R., Griffiths, A.M., Sims, D.W., Mariani, S., Genner, M.J. (2022) Environmental DNA captures elasmobranch diversity in a temperate marine ecosystem. Environmental DNA 4, 1024-1038.
- Genner, M.J., Collins R.A., Darwin Tree of Life Consortium (2022) The genome sequence of the Atlantic horse mackerel, Trachurus trachurus (Linnaeus 1758). Wellcome Open Research 7, 118.
- Genner, M.J., Hsu, L.L., Collins, R.A., Smith, A.M., Saxon, A.D., Shechonge, A.H., Ngatunga, B.P. & Turner G.F. (2022) Revision of the genus Ctenochromis, including a description of new genus Shuja from Lake Tanganyika and new species Ctenochromis scatebra sp. nov. from northern Tanzania. European Journal of Taxonomy 819, 123-154.
- Cavill, E., Gopalakrishnan, S., Puetz, L., Ribeiro, A., Mak, S., da Fonseca, R., Pacheco, G., Dunlop, B., Accouche, W., Shah, N., Zora, A., Calabrese, L., Genner, M.J., Jones, G., Guo, C., Zhang, G., Gilbert, M.T.P. (2022) Conservation genomics of the Endangered Seychelles magpie robin (Copsychus sechellarum): A unique insight into the history of a precious endemic bird. Ibis 164, 396-410.
- Gracida-Juarez, C.A., Ioannou, C.C. & Genner, M.J. (2022) Competitive dominance and broad environmental tolerance favour invasive success of Nile tilapia. Hydrobiologia 849, 1161–1176.
- Dornan, T., Fielding, S., Saunders, R.A. & Genner, M.J. (2022) Large mesopelagic fish biomass in the Southern Ocean resolved by acoustic properties. Proceedings of the Royal Society of London B. 289, 20211781.
- Greenhalgh, J., Collins, R.A., Edgley, D., Genner, M.J., Hindle, J., Jones, G., Loughlin, L., O’Donnell, M., Sweet, M. & Batterbee, R. (2022) Environmental DNA-based methods detect the invasion front of an advancing signal crayfish population. Environmental DNA 4, 596-607.
- Ciezarek, A., Ford, A., Etherington, G., Kasozi, N., Malinsky, M., Mehta, T., Penso-Dolfin, L., Ngatunga, B.P., Shechonge, A., Tamatamah, R., Haerty, W., di Palma, F., Genner, M.J. & Turner, G.F. (2022) Whole genome resequencing data enables a targeted SNP panel for conservation and aquaculture of Oreochromis cichlid fishes. Aquaculture 548, 737637.
- Champneys, T., Ferry, K., Tomkinson, S., Genner, M.J. & Ioannou, C.C. (2022) Simulated encounters with a novel competitor reveal the potential for maladaptive behavioural responses to invasive species. Biological Invasions 24, 845-860.
- Lopez-Lopez, L., Genner, M.J., Tarling, G., Saunders, R., O’Gorman, E. (2022) Ecological networks in the Scotia Sea: structural changes across latitude and depth. Ecosystems 25, 457-470.
2021
- Sainsbury, N.C., Schuhmann, P.W., Turner, R.A., Grilli, G., Pinnegar, J.K., Genner, M.J. and Simpson, S.D. (2021) Trade-offs between physical risk and economic reward affect fisher’s vulnerability to changing storminess. Global Environmental Change 102228.
- Vernaz, G., Malinsky, M., Svardal, H., Du, M., Tyers, A.M., Santos, M.E., Durbin, R., Genner, M.J., Turner, G.F. & Miska, E.A. (2021) The methylomes of Lake Malawi cichlids reveal epigenetic variation associated with phenotypic diversification. Nature Communications 12, 5870.
- Mariani, S., Harper, L.A, Collins, R.A., Baillie, C., Wangensteen O.S., McDevitt, A.D., Heddell-Cowie, M. & Genner, M.J. (2021) Estuarine molecular bycatch as a landscape-wide biomonitoring tool. Biological Conservation 261, 109287
- Collins, R.A., Trauzzi, G., Maltby, K.M., Gibson, T.I., Ratcliffe, F.C., Hallam, J., Rainbird, S., Maclaine, J., Henderson, P.A., Sims, D.W., Mariani, S., & Genner, M.J. (2021) A generalised, dynamic DNA reference library pipeline for metabarcoding of fishes. Journal of Fish Biology 99, 1446-1454.
- Cumberlidge, N., Johnson, E., Clark, P.F., Genner, M.J. (2021) Unravelling the Potamonautes lirrangensis (Rathbun, 1904) species complex (Potamoidea: Potamonautidae), with the description of a new species. European Journal of Taxonomy 744, 145–178.
- Blackwell, T., Ford, A., Ciezerek, A., Bradbeer, S., Gracida-Juarez,C., Smith, A., Ngatunga, B.P., Shechonge, A., Tamatamah, R., Etherington, G., Haerty, W, Di Palma, F. Turner, G.F. Genner, M.J. (2021) Newly discovered cichlid fish biodiversity threatened by hybridization with non-native species. Molecular Ecology 30, 895-911.
2020
- Hastings, R.A., Rutterford, L.A., Freer, J.J., Collins, R.A., Simpson, S.D. and Genner, M.J., 2020. Climate change drives poleward increases and equatorward declines in marine species. Current Biology 30, 1572-1577.
- Alzaylaee, H., Collins, R.A., Rinaldi, G., Shechonge, A., Ngatunga, B., Morgan, E.R. and Genner, M.J., 2020. Schistosoma species detection by environmental DNA assays in African freshwaters. PLoS Neglected Tropical Diseases, 14, e0008129.
- Alzaylaee, H., Collins, R.A., Shechonge, A., Ngatunga, B.P., Morgan, E.R. and Genner, M.J., 2020. Environmental DNA-based xenomonitoring for determining Schistosoma presence in tropical freshwaters. Parasites & Vectors, 13, 63.
- Svardel, H., Quah, F.X., Malinsky, M., Ngatunga, B.P., Miska, E.A., Salzburger, W., Genner, M.J., Turner, G.F. and Durbin, R. (2020) Ancestral hybridisation facilitated species diversification in the Lake Malawi cichlid fish adaptive radiation. Molecular Biology and Evolution 37, 1100-1113.
- Bradbeer, S.J., Ngatunga, B.P. Turner, G.F. and Genner, M.J. (2020) Relative growth of invasive and indigenous tilapiine cichlid fish in Tanzania. African Journal of Aquatic Science 45, 378-381.
- Greenhalgh, J.A., Genner, M.J., Jones, G. and Desjonquères, C. (2020) The role of freshwater bioacoustics in ecological research. Wiley Interdisciplinary Reviews: Water 7, e1416.
- Champneys, T., Genner, M.J. & Ioannou, C.C (2021) Invasive Nile tilapia dominates a threatened indigenous tilapia in competition over shelter Hydrobiologia 848, 3747-3762.
- Maltby, K., Rutterford, L.A., Tinker, J., Genner, M.J., Simpson, S.J. (2020) Projected impacts of warming seas on commercially fished species at a biogeographic boundary of the European continental shelf. Journal of Applied Ecology 57, 2222-2233.
- Freer, J.J, Tarling, G., Collins, M., Partridge, J.C., Genner, M.J. (2020) Predicting circumpolar distributions of lanternfish using 2D and 3D ecological niche models. Marine Ecology Progress Series 647:179-193
2019
- Collins, R.A.,Bakker, J. Wangensteen, O.S., Soto, A., Corrigan, L. Sims, D.W., Genner, M.J. Mariani, S. (2019) Non-specific amplification compromises environmental DNA metabarcoding with COI. Methods in Ecology and Evolution. Methods in Ecology and Evolution 10, 1985-2001.
- Edgley, D. & Genner, M.J. (2019) Adaptive diversification of the lateral line system during cichlid fish radiation. iScience 16, 1-11.
- Day, J., Ruber, L., Stiassny, M., Schliewen, U., Bills, R., Ngatunga, B.P., Shechonge, A., Ford, A., Bullner, T., Pang, L., Genner, M.J., Turner, G.F. & Seehausen, O. (2019) Multilocus phylogeny of Oreochromis cichlid fishes reveals reticulate evolution and recent colonisation of extreme aquatic environments. Molecular Phylogenetics and Evolution 136, 215-226.
- Shechonge, A.,Ngatunga, B.P., Tamatamah, R., Bradbeer, S.J., Sweke, E., Smith, A., Turner G.F. & Genner, M.J. (2019) Population genetics of Nile tilapia confirms the Lake Tanganyika population as a unique genetic resource. Environmental Biology of Fishes 102, 1107-1117
- Freer, J.J, Collins, M., Partridge, J.C., Tarling, G., Genner, M.J. (2019) Predicting future distributions of lanternfishes; a significant ecological resource within the Southern Ocean. Diversity and Distributions 25, 1259-1272.
- Dornan, T., Fielding, S., Saunders, R.A., Genner, M.J. (2019) Swimbladder morphology masks Southern Ocean mesopelagic fish biomass. Proceedings of the Royal Society of London B. 286, 20190353.
- Bradbeer, S.J., Harrington, J., Watson, H., Warraich, A., Shechonge, A., Smith, A., Tamatamah, R., Ngatunga, B.P., Turner, G.F. & Genner, M.J. (2019) Hybridization between introduced and critically endangered indigenous tilapia fishes in northern Tanzania. Hydrobiologia 832, 257-268.
- Erpenbeck, D., Steiner, M., Schuster, A., Genner, M.J., Manconi, R., Pronzato, R., Ruthensteiner, B.; Van den Spiegel, D., van Soest, R., Wörheide, G. (2019) Minimalist barcodes for sponges - A case study classifying African freshwater Spongillida. Genome 62, 1-10.
- Shechonge, A., Ngatunga, B.P., Bradbeer, S.J., Day, J.J., Freer, J.J., Ford, A.G.P., Kihedu, J., Richmond, T., Mzighani, S., Smith, A.M., Sweke, E.A., Tamatamah, R., Tyers, A., Turner, G.F. & Genner, M.J. (2019) Widespread colonization of Tanzanian catchments by introduced Oreochromis tilapia fishes: the legacy from decades of deliberate introduction. Hydrobiologia 832, 235-253.
2018
- Malinsky, M., Svardal, H., Tyers, A., Miska, E., Genner, M.J., Turner, G.F. & Durbin, R. (2018) Whole genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow. Nature Ecology and Evolution 2, 1940-1955.
- Collins, R.A., Wangensteen, O.S., Mariani, S., Sims, D.W., Genner, M.J. (2018) Persistence of environmental DNA in marine systems. Communications Biology 1, 185.
- York RA, Patil, C., Abdilleh, K., Johnson, Z.V., Conte, M., Kocher, T.D., Genner, M.J., McGrath, P.T., Fraser, H.B., Fernald, R.D., Streelman, J.T. (2018) Behavior-dependent cis-regulation implicates genes and pathways associated with bower building in cichlid fishes. PNAS 115, E11081-E1109
- Shechonge, A., Ngatunga, B.P., Tamatamah, R., Bradbeer, S.J., Harrington, J., Ford, A.G.P., Turner G.F. & Genner, M.J. (2018) Losing cichlid fish biodiversity: genetic and morphological homogenization following colonisation by introduced species. Conservation Biology 5, 1199-1209.
- Freer, J.J., Partridge J.C., Tarling G.A., Collins M.A., Genner M.J. (2018) Predicting ecological responses in a changing ocean: The effects of future climate uncertainty. Marine Biology 165, 7.
2017 and earlier
- Hawkins, S.J., Adams, L.C., Bray, S., Burrows, M.T., Firth, L.B., Genner, M.J., Leung, K.M., Mieszkowska, N., Moore, P.J., Pack, K., Schuster, H., Sims D.W., Southward, E.C. (2017) Distinguishing globally-driven changes from regional- and local-scale impacts: the case for long-term and broad-scale studies of recovery from pollution. Marine Pollution Bulletin. 2, 573-586.
- Hahn C, Genner MJ, Turner GF, Joyce, DA (2017) The genomic basis of adaptation to the deep water ‘twilight zone’ in Lake Malawi cichlid fishes. Evolution Letters 1, 184-198.
- Parsons PJ, Bridle JR, Rüber L, Genner MJ (2017) Evolutionary divergence in life history traits among populations of the Lake Malawi cichlid fish Astatotilapia calliptera. Ecology and Evolution 7, 8488-8506.
- Sungani, H., Ngatunga, B.P., Koblmüller, S., Makinen, T., Skelton, P.H. & Genner, M.J. (2017) Multiple colonisations of Lake Malawi by the cyprinid genus Opsaridium (Teleostei: Cyprinidae). Molecular Phylogenetics and Evolution 107, 256-265.
- Winkelmann, K., Rüber, L. & Genner, M.J. (2017) Lake level fluctuations and divergence of cichlid fish ecomorphs in Lake Tanganyika. Hydrobiologia 791, 21-34.
- Douglas, R.H., Genner, M.J., Hudson, A.G., Partridge, J.C. & Wagner, H.J. (2016) Localisation and origin of the bacteriochlorophyll-derived photosensitizer in the retina of a deep-sea dragon fish. Scientific Reports (Nature) 6, 39395.
- Evans, S.M., McKenna, C., Simpson, S.D., Tournois, J., Genner, M.J. (2016) Patterns of species range evolution in Indo-Pacific reef assemblages reveal the Coral Triangle as a net source of transoceanic diversity. Biology Letters 12, 20160090.
- Sungani, H., Ngatunga, B.P., Genner, M.J. (2016) Migratory behaviour shapes spatial genetic structure of cyprinid fishes within the Lake Malawi catchment. Freshwater Biology 61, 1062–1074.
- Ball, R.E., Serra-Pereira, B., Ellis, J., Genner, M.J., Iglésias, S., Johnson, A., Jones, C., Leslie, R., Lewis, J., Mariani, S., Menezes, G., Neat, F., Noble, L., Sims, D.W., Griffiths, A.M. (2016) Resolving taxonomic uncertainty in vulnerable elasmobranchs: Are the Madeira skate (Raja maderensis) and the thornback ray (Raja clavata) distinct species? Conservation Genetics 17, 565-576.
- Malinsky, M., Challis, R., Tyers, A.M., Schiffels, S., Terai, Y., Ngatunga, B.P., Miska, E.A., Durbin, R., Genner, M.J. and Turner, G.F. (2015) Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake. Science 350, 1493-1498.
- Genner, M.J., Ngatunga, B.P. Mzighani, S., Smith, A., Turner, G.F. (2015) Geographical ancestry of Lake Malawi’s cichlid fish diversity. Biology Letters 11: Article#20150232.
- Sungani, H. & Genner, M.J. (2015) Microsatellite markers from 454-sequencing of the threatened Lake Malawi endemic mpasa Opsaridium microlepis. In Conservation Genetic Resources 7:917–944.
- Rutterford L.A., Simpson, S.D., Jennings S., Johnson, M.P. Blanchard, J.L., Schön, P-J. Sims D.W. Tinker J. & Genner, M.J. (2015) Future fish distributions constrained by depth in warming seas. Nature Climate Change 5, 569–573.
- Genner, M.J., Turner, G.F., Smith, A., Mzighani, S., Ngatunga, B.P. (2015) Presence of the cyprinid fish Acapoeta tanganicae within the Lake Rukwa catchment supports historic riverine connectivity with Lake Tanganyika. Acta Ichthyologica et Piscatoria 45, 109-112.
- Nichols, P., Genner, M.J., Van Oosterhout, C., Smith, A., Swanstrom, J., Parsons, P., Sungani, H. & Joyce, D.A. (2015) Secondary contact seeds phenotypic novelty in cichlid fishes. Proceedings of the Royal Society of London B. 282, Article#20142272.
- Montera-Serra, I., Edwards, M. & Genner, M.J. (2015) Warming shelf seas drive the tropicalization of European pelagic fish communities. Global Change Biology 21: 144-153.
- Genner, M.J. & Turner, G.F. (2015) Timing of population expansions within the Lake Malawi haplochromine cichlid fish radiation. Hydrobiologia 748: 121-132.
- Winkelmann K, Genner, M.J., Takahashi, T. and Rüber, L. (2014) Competition-driven speciation in cichlid fish. Nature Communications 5,3.
- Gubili, C, Sims, D.W., Verissimo, A., Dominici, P., Ellis, J., Grigoriou, P., Johnson, A., McHugh, M., Neat, F., Satta, A., Scarcella, G., Serra-Pereira, B., Soldo, A, Genner, M.J., Griffiths, A.M. (2014) A tale of two seas: contrasting patterns of population structure in the small-spotted catshark across Europe. Royal Society - Open Science 1, Article#140175.
- Genner, M.J., Connell, E., Shechonge, A., Smith, A., Swanstrom, J., Mzighani, S., Mwijage, A., Ngatunga, B.P. and Turner, G.F. (2013) Nile tilapia invades the Lake Malawi catchment. African Journal of Aquatic Sciences. 38, sup. 1, 85-90.
- Hawkins, S.J., Firth, L.B. McHugh, M., Poloczanska, E.S., Herbert, R.J.H., Burrows, M.T., Kendall, M.A., Moore, P.J., Thompson, R.C., Jenkins, S.R., Sims, D.W., Genner, M.J. & Mieszkowska, N. (2013) Data rescue and re-use: recycling old information to address new policy concerns. Marine Policy 42, 91-98.
- Genner M.J. & Turner, G.F. (2012) Ancient hybridization and phenotypic novelty within Lake Malawi’s cichlid fish radiation. Molecular Biology and Evolution. 29, 195-206.
- Hawlitschek, O., Hendrich, L., Espeland, M., Toussaint, E.F., Genner, M.J. & Balke, M. (2012) Pleistocene climate change promoted rapid diversification of aquatic invertebrates in Southeast Australia. BMC Evolutionary Biology 12:142.
- Genner, M.J., Hillman, R., McHugh, M., Hawkins, S.J. & Lucas, M.C. (2012) Contrasting demographic histories of European and North American sea lamprey (Petromyzon marinus) populations inferred from mitochondrial DNA sequence variation. Marine and Freshwater Research 53, 827-833.
- Jolly, M.T., Aprahamian, M.W., Hillman, R., Maitland, P.S., Piper, R. Henderson, P.A., Hawkins, S.J. and Genner, M.J. (2012) Population genetic structure of protected allis shad (Alosa alosa) and twaite shad (Alosa fallax). Marine Biology 159, 675-687
- Griffiths, A.M., Jacoby, D.M.P., Casane D., McHugh, M., Genner, M.J. and Sims, D.W. (2012) First analysis of multiple paternity in an oviparous shark species, the small-spotted catshark (Scyliorhinus canicula L.). Journal of Heredity 103, 166-173.
- Simpson, S.D., Jennings, S., Johnson, M.P., Blanchard, J.L., Schön, P.J., Sims, D.W. and Genner, M.J. (2011) Continental shelf-wide response of a fish assemblage to rapid warming of the sea. Current Biology 21, 1565-1570.
- Jolly, M.T., Maitland, P.S. and Genner, M.J. (2011) Genetic monitoring of two decades of hybridization between allis shad (Alosa alosa) and twaite shad (Alosa fallax) Conservation Genetics. 12, 1087-1100,
- Griffiths, A.M., Casane, D., McHugh, M., Wearmouth, V.J., Sims, D.W. and Genner, M.J. (2011) Characterisation of polymorphic microsatellite loci in the small-spotted catshark (Scyliorhinus canicula L.). Conservation Genetic Resources. 3, 705-709.
- Joyce DA, Lunt DH, Genner, MJ, Turner GF, Bills R & Seehausen O (2011) Repeated colonization and hybridization characterize the Lake Malawi cichlid fish species flock, Current Biology, 21, R108-R109.
- McHugh, M., Sims, D.W., Partridge, J.C. & Genner, M.J. (2011) A century later: long-term change of an inshore temperate marine fish assemblage. Journal of Sea Research 65, 187-194.
- Griffiths, A.M., Sims, D.W., Johnson, A., Lynghammer, A., McHugh, M., Bakken, T. & Genner, M.J. (2011) Levels of connectivity between longnose skate (Dipturus oxyrinchus) in the Mediterranean Sea and the north-eastern Atlantic Ocean. Conservation Genetics 12, 577-582.
- Young, K.A., Genner, M.J. Haesler, M.P. and Joyce, D.A. (2010) Sequential female choice drives complex sexual selection on bower shape in a cichlid fish. Evolution 64, 2246–2253.
- Griffiths, A.M., Sims, D.W., Cotterell, S.P., El Nagar, A., Ellis, J.R., Lynghammar, A., McHugh, M., Neat, F.C., Pade, N., Pereira, B.S., Rapp, T., Wearmouth, V.J. & Genner, M.J. (2010) Molecular markers reveal spatially-segregated cryptic species in a critically endangered fish, the common skate (Dipturus batis). Proceedings of the Royal Society of London B 277, 1497-1503.
- Genner, M.J. & Haesler, M.P. (2010) Pliocene isolation of a north-west Saharan cichlid fish. Journal of Fish Biology 76, 435-441.
- Genner, M.J., Halliday, N.C., Simpson, S.D., Hawkins, S.J., Southward, A.J. and Sims, D.W. (2010) Temperature-driven phenological changes within a marine larval fish assemblage. Journal of Plankton Research 32, 699-708.
- Genner, M.J., Nichols, P., Shaw, P.W., Carvalho, G.R., Robinson, R.L. and Turner G.F. (2010) Population structure on breeding grounds of Lake Malawi’s ‘twilight zone’ cichlid fishes. Journal of Biogeography 37, 258-269.
- El Nagar, A., McHugh, M., Rapp, T., Sims, D.W. and Genner, M.J. (2010) Characterisation of polymorphic microsatellite markers for skates (Elasmobranchii: Rajidae) from Expressed Sequence Tags. Conservation Genetics 11, 1203-1206.
- Genner, M..J., Sims, D.W., Southward, A.J., Budd, G.C., Masterson, P., McHugh, M., Rendle, P., Southall, E.J., Wearmouth, V.J. and Hawkins, S.J. (2010) Body size-dependent responses of a marine fish assemblage to climate change and fishing over a century-long scale. Global Change Biology 16, 517-527.
- Genner, M.J., Knight, M.E., Haesler, M.P. and Turner, G.F. (2010) Establishment and expansion of Lake Malawi rock fish populations after a dramatic Late Pleistocene lake level rise. Molecular Ecology 19, 170-182.
- Martin, C.H. & Genner, M.J. (2009) A role for male bower size as an intrasexual signal in a Lake Malawi cichlid fish. Behaviour 146, 963-978.
- Young K.A., Genner M.J., Joyce D.A & Haesler, M.P. (2009) Hotshots, hotspots and female preference: exploring lek evolution models in a bower building cichlid fish. Behavioral Ecology 20, 609-615.
- Cleary, D.F.R., Genner, M.J., Koh, L.P., Boyle, T.J.B., Setyawati, T., De Jong, R. & Menken, S.B.J. (2009) Butterfly species and traits associated with selectively logged forest in Borneo. Basic and Applied Ecology 10, 237-245.
- Martin, C.H. & Genner, M.J. (2009) Does resource partitioning during ecological bottlenecks facilitate coexistence of Lake Malawi cichlid fishes? Canadian Journal of Fisheries and Aquatic Sciences 66, 579-588.
- Genner, M.J., Young, K.A., Haesler, M. & Joyce, D.A. (2008) Indirect mate choice, direct mate choice, and species recognition in a bower-building cichlid fish lek. Journal of Evolutionary Biology 21, 1387–1396.
- Genner, M.J., Nichols, P., Carvalho, G.R., Robinson, R.L. Shaw, P.W. & Turner, G.F. (2008) Genetic homogeneity of an exploited Lake Malawi cichlid fish. Freshwater Biology 53, 1823–1831.
- Bothwell, J.H.F., Kisielewska, J., Genner, M.J., McAinsh, M.R. & Brownlee, C. (2008) Ca2+ signals co-ordinate zygotic polarization and cell cycle progression in the brown alga, Fucus serratus. Development 135, 2173-2181.
- Genner, M.J., Michel, E. & Todd, J.A. (2008) Resistance of an invasive gastropod to an indigenous trematode parasite in Lake Malawi. Biological Invasions 10, 48-49.
- Genner, M.J., Nichols, P., Carvalho, G.R., Robinson, R.L. Shaw, P.W. & Turner, G.F. (2007) Evolution of a cichlid fish in a Lake Malawi satellite lake. Proceedings of the Royal Society of London B. 274, 2249-2257.
- Genner, M.J., Seehausen, O., Lunt, D., Joyce, D.A., Carvalho, G.R., Shaw, P.W and Turner, G.F. (2007) Age of cichlids: new dates for ancient lake fish radiations. Molecular Biology and Evolution 24,1269-1282.
- Genner, M.J., Todd, J.A., Michel, E., Erpenbeck, D., Joyce, D.A., Jimoh, A., Piechocki, A. & Pointier J-P. (2007) Amassing diversity in an ancient lake: Evolution of a morphologically diverse parthenogenetic gastropod assemblage in Lake Malawi. Molecular Ecology 16, 517–530.
- Genner, M.J., Nichols, P., Carvalho, G.R., Robinson, R.L. Shaw, P.W. & Turner, G.F. (2007) Reproductive isolation among deep water cichlid fishes of Lake Malawi differing in monochromatic male breeding dress. Molecular Ecology 16, 651–662.
- Genner, M.J., Botha A. & Turner, G.F. (2006) Translocations of rocky habitat cichlid fishes to Nkhata Bay, Lake Malawi. Journal of Fish Biology. 69, 622-628.
- Cleary, D.F.R., Fauvelot, C., Genner, M.J., Menken, S.B.J., Mooers, A.Ø. (2006) Parallel responses of species and genetic diversity to ENSO-induced environmental destruction. Ecology Letters. 9, 304-310.
- Cleary, D.F.R & Genner, M.J. (2006) Diversity patterns of Bornean butterfly assemblages. Biodiversity and Conservation 15, 517-538.
- 15. Cleary, D.F.R., Genner, M.J., Boyle, T.J.B., Setyawati, T., Angraeti, C.D., Menken, S.B.J. (2005). Dependence of bird species richness and composition upon local- and large-scale environmental factors in Borneo. Landscape Ecology 20, 989–1001.
- Genner, M.J., Michel, E., Erpenbeck, D., de Voogd, N., Witte, F. & Pointier, J-P. (2004) Camouflaged invasion of Lake Malawi by an oriental gastropod. Molecular Ecology 13, 2135-2141.
- Genner, M.J., Taylor, M.I., Cleary, D.F.R., Hawkins, S.J., Knight M.E. & Turner, G.F. (2004) Beta diversity of rock-cichlid fishes in Lake Malawi: importance of environmental and spatial factors. Ecography 27, 601-610.
- Genner, M.J., Sims, D.W., Wearmouth, V.J., Southall, E.J., Southward, A.J., Henderson, P.A. & Hawkins, S.J. (2004) Regional climate warming drives long-term community changes of British marine fish. Proceedings of the Royal Society of London B. 271, 655-661. (Commentary in Current Biology 14, R173-174).
- Genner, M.J., Seehausen, O., Cleary D.F.R., Knight, M.E., Michel, E. & Turner, G.F. (2004) How does the taxonomic status of allopatric populations influence species richness within African cichlid fish assemblages? Journal of Biogeography 31, 93-102.
- Cleary, D.F.R. & Genner, M.J. (2004) Changes in rainforest butterfly diversity following major ENSO-induced fires in Borneo. Global Ecology and Biogeography 13, 129-140.
- Sims, D.W., Wearmouth, V.J., Genner, M.J., Southward, A.J. & Hawkins, S.J. (2004) Low-temperature-driven early spawning migration of a temperate marine fish. Journal of Animal Ecology 73, 333-341.
- Michel, E., Todd, J.A., Cleary D.F.R., Kingma, I., Cohen, A.S. & Genner, M.J. (2004) Scales of endemism: Challenges for conservation and incentives for evolutionary studies in a gastropod species flock from Lake Tanganyika. Journal of Conchology Special Publication 3, 155-172.
- Genner, M.J. & Michel, E. (2003) Fine-scale habitat associations of soft-sediment gastropods at Cape Maclear, Lake Malawi. Journal of Molluscan Studies 69, 325-328.
- Genner, M.J., Hawkins, S.J. & Turner, G.F. (2003) Isotopic change throughout the life history of a Lake Malawi cichlid fish. Journal of Fish Biology 62, 907-917.
- Sims, D.W., Genner, M.J., Southward, A.J. & Hawkins, S.J. (2001) Timing of squid migration reflects North Atlantic climate variability. Proceedings of the Royal Society of London B 268, 2607-2611.
- Genner, M.J., Turner, G.F. and Hawkins, S.J. (1999) Resource control by territorial male cichlid fish in Lake Malawi. Journal of Animal Ecology 68, 522-529.
- Genner, M.J., Turner G.F., Barker S. and Hawkins, S.J. (1999) Niche segregation among Lake Malawi cichlid fishes? Evidence from stable isotope signatures. Ecology Letters 2, 185-190.
- Genner, M.J., Turner, G.F. and Hawkins S.J. (1999) Foraging of rocky habitat cichlid fishes in Lake Malawi, evidence of niche partitioning? Oecologia 121, 283-292. 4.
- Van Oppen, M.J.H., Turner, G.F., Rico, C., Robinson, R.L., Deutsch, J.C., Genner, M.J. and Hewitt, G.M. (1998) Assortative mating among rock-dwelling cichlid fishes supports high estimates of species richness from Lake Malawi. Molecular Ecology 7, 991-1001.
Chapters in edited books (refereed)
- Hawkins, S.J., Allen, J.R., Ross, P.M. & Genner, M.J. (2002) Marine and coastal ecosystems. In Perrow, M.R. & Davy, A.J. eds. Handbook of Ecological Restoration: Volume 2 – Restoration in Practice. Cambridge University Press. Cambridge. UK. pp 121-148.
Review articles / commentaries
- Genner, M.J. (2023) Cichlid fish seized an ecological opportunity to diversify. Nature, 622, 243-244.
- Greenhalgh, J., Genner, M.J. and Jones, G. (2022) A day in the life of a pond soundscape: singing insects and popping plants. Freshwater Biological Association. https://www.fba.org.uk/articles
- Sainsbury, N., Genner, M.J., Saville, G., Pinnegar, J., O’Neill, C., Simpson, S.D. & Turner R. (2018) Changing storminess and global capture fisheries. Nature Climate Change 9, 655-659.
- Genner, M.J., Freer, J.J. and Rutterford, L.A. (2017) Biological responses to ocean warming. Foresight – Future of the Sea Evidence review. Government Office for Science.
Hawkins, S.J., Evans A.J., Firth L.B., Genner, M.J., Herbert, R.J.H., Adams L.C., Moore, P.J, Mieszkowska, N., Thompson, R.C., Burrows, M.T. & Fenberg, P.B. (2016) Impacts and effects of ocean warming on intertidal rocky habitats. In. D. Laffoley & J. Baxter (eds) Explaining ocean warming: causes, scale, effects and consequences. IUCN. 147-176. - Hawkins, S.J., Bohn, K., Sims D.W., Ribeiro, P., Faria J., Presa, P., Pita, A., Martins, G.M., Neto, A.I., Burrows, M.T. & Genner, M.J. (2016) Fisheries stocks from an ecological perspective: Methodological disentangling between ecological connectivity and genetic interchange. Fisheries Research 179, 333-341.
- Genner, M.J. (2016) Staying out of the heat: how habitat use is determined by local temperature Journal of Animal Ecology, 85, 611-613.
- Simpson, S.D., Blanchard, J.L. and Genner, M.J. (2013) Impacts of climate change on fish, Impacts of climate change on fish, MCCIP Science Review, 113-124, doi:10.14465/2013.arc13.113-124
- Mieszkowska, N., Genner, M.J., Hawkins, S.J. and Sims D.W. (2009) Atlantic cod: Impacts of climate change and commercial fishing. Advances in Marine Biology 56, 213-273.
- Hawkins S.J., Sugden H.E., Mieszkowska N., Moore P.J., Poloczanska E., Leaper R., Herbert R., Genner M.J., Moschella P.S., Thompson R.C., Jenkins S.R., Southward A..J., Burrows M.T. (2009) Consequences of climate-driven biodiversity changes for ecosystem functioning. Marine Ecology Progress Series 396, 245-259.
- Hawkins, S.J., Moore, P., Burrows, M., Poloczanska, E., Mieszkowska, N., Jenkins, S.R., Thompson, R.C., Genner, M.J & Southward, A.J. (2008) Complex interactions in a rapidly changing world: responses of rocky shore communities to recent climate change. Climate Research 37, 123–133.
- Hawkins, S.J., Mieszkowska, N., Moschella, P.S., Pannacciulli, F., Frost, M.T., Burrows, M.T., Moore, P., Poloczanska, E., Herbert, R.J., Sims, D., Genner, M.J., Thompson, R.C., Hiscock, K. and Southward, A.J. (2007) Conserving biodiversity of seas and coasts in a rapidly changing world. Biologia Marina Mediterranea 14, 3-19.
- Genner, M.J. & Turner, G.F. (2005) The mbuna cichlids of Lake Malawi: a model for rapid speciation and adaptive radiation. Fish and Fisheries 6, 1-34.
- Southward, A.J., Langmead, O., Hardman-Mountford, N.J., Aiken, J., Boalch, G.T., Dando, P.R., Genner, M.J., Joint, I., Halliday, N.C., Harris, R.P., Leaper, R., Mieszkowska, N., Pingree, R.D., Richardson, A.J., Sims, D.W., Smith, T., Walne, A.W. & Hawkins, S.J. (2004) Long-term oceanographic and ecological research in the western English Channel. Advances in Marine Biology 47, 1-105.
- Hawkins, S.J., Southward, A.J, & Genner, M.J. (2003) Detection of environmental change: Evidence from the Western English Channel. Science of the Total Environment 310, 245-256.